CHROMATOGRAM VIEWERS:
FinchTV – http://www.geospiza.com/Products/finchtv.shtml
Chromas – http://www.technelysium.com.au/chromas.html

PRIMER DESIGN TOOL
Primer3 - http://frodo.wi.mit.edu/primer3/

MUTATION ANALYSIS
Splicing prediction modules:
GeneSplicer – http://www.cbcb.umd.edu/software/GeneSplicer/
NetGene2 – http://www.cbs.dtu.dk/services/NetGene2/
Human Splicing Finder- http://www.umd.be/HSF/
NNSPLICE- http://www.fruitfly.org/seq_tools/splice.html

Automated Splice Site Analysis- https://splice.uwo.ca/

Protein sequence analysis tools:

PSIPRED – http://bioinf.cs.ucl.ac.uk/psipred/
PolyPhen-2 prediction of functional effects of human nsSNPs- http://genetics.bwh.harvard.edu/pph2/
SIFT (sorts intolerant from tolerant amino acid substitutions) - http://sift.jcvi.org/
Align GVGD - http://agvgd.iarc.fr/index.php

Other useful tools

NCBI - http://www.ncbi.nlm.nih.gov/
The NPS@ (Network Protein Sequence Analysis) Web server - http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_server.html

ExPASy Proteomics Server - http://expasy.org/

UCSC's Genome Browser - http://genome.ucsc.edu/cgi-bin/hgGateway